
These Pumpkin Cream Cheese Muffins are the perfect blend of moist pumpkinspiced cake and a luscious creamy filling that tastes like cheesecake. They are ideal for breakfast or dessert, offering a comforting treat that feels special without requiring too much fuss. Thanks to the careful method, the cream cheese layer remains silky and does not bubble up during baking, while the crumb topping adds a delightful crunch with a caramelized hint from brown and granulated sugars.
I first made these muffins on a chilly autumn morning, and ever since, they have been requested at every family gathering. The way the cream cheese stays smooth amazed me the first time and has made it my go to technique.
Ingredients
- Cream cheese filling: Fullfat block cream cheese softened at room temperature delivers rich creaminess and choosing a quality brand ensures smooth texture without lumps. Powdered sugar smooths the filling and adds sweetness without graininess. Pure vanilla extract brings subtle fragrance and enhances the cheesecake flavor
- Streusel crumb topping: Raw pecan halves add crunchy texture and nutty depth choose fresh nuts for best flavor. Flour acts as a base for the crumb topping and helps bind the ingredients. Brown sugar lends a molasses note and moisture contributing to the crisp topping. Granulated sugar balances texture and sweetness. Ground cinnamon infuses warmth and spice depth. Cold butter cubed helps create a flaky, pebble like crumb using cold butter is key for the best texture
- Wet ingredients: Fresh eggs bind everything and provide structure. Granulated sugar sweetens the batter thoroughly. Pure pumpkin puree should be smooth and thick Libby’s is recommended for consistency. Vegetable oil makes the muffins tender and moist without overwhelming flavor
- Dry ingredients: Allpurpose flour forms the muffin’s structure weigh or spoon lightly to ensure correct amount. Baking soda and baking powder provide lift and lightness. Salt and warm spices like cinnamon, cloves, nutmeg, and ginger create the signature pumpkin spice profile
- Garnish (optional): Coarse turbinado sugar adds sparkling crunch on top. Ground cinnamon enhances final aroma when sprinkled fresh
Instructions
- Cream Cheese Filling:
- Whisk softened cream cheese with powdered sugar and vanilla extract vigorously by hand or with mixer until completely smooth. Make sure no lumps remain. Freeze this mixture while you prepare the rest so it firms slightly but stays scoopable to ensure it holds its shape in the muffins.
- Streusel Crumb Topping:
- Pulse pecans in a food processor a few times just to chop without grinding. Add flour, brown sugar, granulated sugar, and cinnamon and pulse briefly to combine. Sprinkle cold butter cubes on top and pulse until mixture resembles small pebbles. If any butter pieces remain too large, rub them between your fingers blending them into the mix. Set this crumb topping aside in the freezer to keep it cold.
- Prep:
- Preheat your oven to 350 degrees Fahrenheit. Line two muffin pans with 22 liners total. Lightly spray with nonstick spray so muffins release cleanly after baking.
- Mix Wet Ingredients:
- In a large bowl crack the eggs and gently whisk to combine. Add granulated sugar, pumpkin puree, and vegetable oil and mix until smooth and uniform.
- Mix Dry Ingredients:
- In a separate bowl whisk together flour, baking powder, baking soda, salt, and all of the warm spices evenly.
- Combine:
- Pour the dry mixture into the wet ingredients. Stir gently just until everything is moistened and no large patches of flour remain. Avoid overmixing to keep the muffins tender.
- Assemble:
- Spoon about one and a half tablespoons of pumpkin batter into each liner and carefully spread to cover the bottom. Add one rounded tablespoon of cream cheese filling on top of that. Cover the cream cheese layer with the remaining batter, dividing evenly between cups. Top each muffin with a heaping tablespoon of crumb topping and gently pat it into the surface to prevent it from falling off during baking.
- Bake:
- Place muffins in the oven and bake for about 20 to 22 minutes or until a toothpick inserted into the top batter (not the cream cheese) comes out clean. Baking time varies depending on how chilled your cream cheese is. Softer filling means longer bake.
- Cool:
- Let muffins rest in the pan for five minutes, then transfer to a wire rack to cool further. Sprinkle with ground cinnamon and turbinado sugar if desired. These muffins taste great slightly warm, at room temperature, or even reheated briefly in the microwave.

My favorite part of this recipe is the cream cheese layer that stays just soft enough to add that silky surprise in every bite without melting away. I remember making these muffins with my kids on a chilly October afternoon and how their eyes lit up when the cream cheese didn't bubble over. It felt like dessert and breakfast all in one warm hug.
Storage Tips
Store leftover muffins in an airtight container at room temperature for up to three days to keep them moist. For longer storage, freeze them wrapped individually in plastic wrap then placed in a freezer bag they will stay fresh for up to three months. Thaw at room temperature and warm briefly before serving.
Ingredient Substitutions
If you prefer a dairyfree version substitute the cream cheese with a plant based alternative that is firm and spreadable. Use coconut oil in place of vegetable oil for a slight tropical twist. For a glutenfree option try an allpurpose glutenfree flour blend measuring slightly less than the recipe calls for to maintain moisture.
Serving Suggestions
Serve these muffins with a spread of butter, honey, or a drizzle of maple syrup for an indulgent breakfast treat. They also pair beautifully with a hot cup of spiced chai or coffee. Adding a dollop of whipped cream or a scoop of vanilla ice cream turns them into an effortless dessert.

Enjoy these muffins warm or at room temperature for a cozy breakfast or dessert. They also freeze well for easy make ahead batches.
Common Questions About Recipes
- → How do I keep the cream cheese filling creamy and from bubbling up?
Chilling the cream cheese filling before assembling keeps it slightly firm, preventing bubbles during baking and maintaining a smooth texture.
- → Can I substitute nuts in the streusel topping?
Yes, you can replace pecans with walnuts or almonds for a different crunch and flavor profile in the crumb topping.
- → What spices enhance the pumpkin flavor best?
Cinnamon, nutmeg, cloves, and ginger harmonize well to highlight the warm, natural pumpkin taste.
- → How can I prevent muffins from becoming dry?
Mix wet and dry ingredients gently and avoid overmixing. Using vegetable oil and pumpkin puree helps keep the crumb moist.
- → Is it okay to bake muffins with frozen cream cheese filling?
It is best to have the cream cheese filling chilled but not frozen solid to ensure even baking and a creamy center.